Dupsifter Documentation

dupsifter is a command line tool for marking duplicates in both WGS and WGBS datasets. It is based on the samblaster methodology for finding and marking duplicates.

1 Publication

If you use dupsifter, kindly cite:

Jacob Morrison, Wanding Zhou, Benjamin K Johnson, Hui Shen,
Dupsifter: a lightweight duplicate marking tool for whole genome bisulfite sequencing,
Bioinformatics, Volume 39, Issue 12, December 2023, btad729,
https://doi.org/10.1093/bioinformatics/btad729

2 Issues

Issues and bugs can be submitted to: https://github.com/huishenlab/dupsifter/issues.

3 Acknowledgments

  • This work is based on Gregory Faust’s samblaster.
  • This work is supported by NIH/NCI R37CA230748.