
Package index
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tabix()
tabix_gr()
tabix_raw()
- Query records from tabixed BED files
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query_chroms()
- Query the chromosomes or seqnames from a vector of BED files
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summarize_regions()
- Summarize information over genomic regions from any BED file
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make_mat()
make_mat_se()
make_mat_gr()
- Make a matrix from a numeric column of BED files
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summarize_meth_regions()
- Summarize CpGs methylation information over genomic regions
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make_bsseq_mat()
- Make M/beta and coverage matrices from WGBS BED files
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get_granges_string()
- GRanges to region strings
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get_df_string()
- DataFrame to region strings
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get_threads()
- Get the number of available threads
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set_threads()
- Set the number of available threads
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set_log_level()
get_log_level()
- Set and get logging level
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htslib_version()
- Get htslib version and available features