Filter to open sea CpG loci — filterOpenSea • compartmap

Filter to open sea CpG loci

Usage

filterOpenSea(obj, genome = c("hg19", "hg38", "mm10", "mm9"), other = NULL)

Arguments

obj: Input SummarizedExperiment or GRanges object
genome: Which genome to filter
other: GRanges of open sea regions (TODO)

Value

Filtered to open sea CpG loci

Examples

if (requireNamespace("minfi", quietly = TRUE)) {
  data("array_data_chr14", package = "compartmap")
  opensea <- filterOpenSea(array.data.chr14, genome = "hg19")
}
#> Filtering to open sea CpG loci...