Invert, or "fix", compartments that have a minimum confidence score (1-min.conf) — fixCompartments • compartmap

Invert, or "fix", compartments that have a minimum confidence score (1-min.conf)

Usage

fixCompartments(x, min.conf = 0.8, parallel = FALSE, cores = 1)

# S4 method for class 'GRanges'
fixCompartments(x, min.conf = 0.8, parallel = FALSE, cores = 1)

# S4 method for class 'RaggedExperiment'
fixCompartments(x, min.conf = 0.8, parallel = FALSE, cores = 1)

Arguments

x: RaggedExperiment
min.conf: Minimum confidence score to use
parallel: Whether to run in parallel
cores: How many cores to use if running in parallel

Value

A "fixed" set of compartments