Get the global means of a matrix — getGlobalMeans • compartmap

Get the global means of a matrix

Usage

getGlobalMeans(obj, targets = NULL, assay = c("atac", "rna", "array"))

Arguments

obj: Input SummarizedExperiment object
targets: Column names or indices to indicate which samples to shrink towards
assay: What type of assay the data are from

Value

A vector of global or targeted means

Examples

data("k562_scrna_chr14", package = "compartmap")
scrna.global.means <- getGlobalMeans(k562_scrna_chr14, assay = "rna")