Import and optionally summarize a bigwig at a given resolution — importBigWig • compartmap

Import and optionally summarize a bigwig at a given resolution

Usage

importBigWig(
  bw,
  bins = NULL,
  summarize = FALSE,
  genome = c("hg19", "hg38", "mm9", "mm10")
)

Arguments

bw: Path a bigwig file
bins: Optional set of bins as a GRanges to summarize the bigwig to
summarize: Whether to perform mean summarization
genome: Which genome is the bigwig from ("hg19", "hg38", "mm9", "mm10")

Value

SummarizedExperiment object with rowRanges corresponding to summarized features