biscuit bc

Usage: biscuit bc [options] <FASTQ 1> [FASTQ 2]

Processing Options:
    -m, --mate INT             which mate the barcode is in (1 or 2) [1]
    -s, --bc-start INT         start position of barcode in read (1-based) [1]
    -l, --bc-length INT        length of barcode [8]
Output Options:
    -o, --output-prefix STR    prefix for output files (NULL writes to stdout) [NULL]
General Options:
    -h, --help             This help

Note: When writing to stdout, reads 1 and 2 will alternate (i.e., are interleaved)