Package index • iscream

Reading

Read data from aligned WGBS bedfiles

By region

tabix(): Query lines from a tabixed bedfile

summarize_regions(): Summarize CpGs methylation information over genomic regions

query_all(): Query all CpGs from input genomic regions

Utilities

query_chroms(): Query the chromosomes or seqnames from a vector of files

Settings

Multithreading

get_threads(): Get the number of available threads

set_threads(): Set the number of available threads

Logging

get_log_level(): Get the current log level

set_log_level(): Set logging level