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Reading

Read data from aligned WGBS bedfiles

By region

tabix()
Query lines from a tabixed bedfile
query_chroms()
Query the chromosomes or seqnames from a vector of files
summarize_regions()
Summarize CpGs methylation information over genomic regions
query_all()
Query all CpGs from input genomic regions

Utilities

get_granges_string()
GRanges to region strings
get_df_string()
DataFrame to region strings

Settings

Multithreading

get_threads()
Get the number of available threads
set_threads()
Set the number of available threads

Logging

get_log_level()
Get the current log level
set_log_level()
Set logging level